Datasets

Compare our data sets

To date, datasets have been released for cells treated with a broad range of perturbations, including siRNA and CRISPR/Cas9 genetic knockdown/knockout, small molecules at multiple concentrations, SARS-CoV-2 virus, immune-focused proteins, and a model of COVID-19 cytokine storm.

Release Date

January 2023

August 2020

April 2020

August 2020

June 2019

Categories

Genetic Perturbations (genome-wide CRISPR)

Small molecules

Large molecules

Infectious disease

Small & large molecules

Infectious disease

Small molecules

Genetic perturbations (siRNA)

Cell Types

HUVEC

HRCE
VERO

HUVEC
RPE
U2OS
HepG2

Stains (Channels)

Hoechst
ConA
Phalloidin
Syto14
MitoTracker
WGA

Hoechst
ConA
Phalloidin
Syto14
WGA

Hoechst
ConA
Phalloidin
Syto14
MitoTracker
WGA

Plate Density

1536-well

384-well

Imaging Sites per Well

Perturbations Evaluated

17,063 CRISPR/Cas9-mediated gene knockouts  

1,674 compounds at 8 concentrations each

434 soluble factors at 6 concentrations

1,856 small molecules at 4-6 concentrations in three COVID-19-associated cytokine storm conditions (severe storm, healthy, and no cytokines)

1,672 small molecules at 6+ concentrations  

Three viral conditions (active virus, irradiated, mock)

1,138 siRNAs

Total Number of Images

~2.2M

131,953

70,384

305,520

125,510

Image Dimension

2048x2048x6

1024x1024x6

2048x2048x6

1024x1024x5

512x512x6

Compressed Dataset Size

~83,100 GB

~185 GB

~409 GB

~450 GB

~46 GB

License

CC-BY-NC-SA

CC-BY

CC-BY-NC-SA

Compare our data sets

Want to help us explore the uncharted?